R:
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Filtering GWAS 0.05 results
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GWAS rerun MAF 0.05
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Using gaston for estimating heritability-1
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Re-trying default merge
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Troubleshooting missing genotype filtering
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Performing PCA on genomic data
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Fixing WGS ID and merging data
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Extracting data for variants common in both file sets
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Cleaning and preparing genomic data
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Extracting genomic data exclusive to NIES
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Generating basic statistics for merged data set
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Extracting common variants from both data sets
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PCA of Phenotypic Data
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Adding Conjunctival UVAF to dataset
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Pearson's correlations on imputed data set
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MIPCA of Phenotypic Data without LogMAR-with-PH values
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Multiple PCA Imputation of Quantitative Phenotypic Data - updated
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Multiple PCA Imputation of Phenotypic Data
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Example of data imputation with missMDA
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Subsetting relevant phenotypic data
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Finding outliers in quantitative data
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Plotting histograms for quantitative phenotypic data
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Cleaning phenotypic data